Start at:  Fri Mar  9 14:06:31 2012

Load in 12 db seqs, total size 85844 bp. 0 secs passed

total_kmers: 43046721

Create seed table. 1 secs passed

max mismatches: 2     max multi-hits: 100     max Ns: 5     seed size: 16     index interval: 4

quality cutoff: 0     base quality char: '!'

min fragment size:28     max fragemt size:500

start from read #1     end at read #4294967295

additional alignment: T in reads => C in reference

param.chains:0

mapping strand: ++,-+

Single read alignment(1 threads)

Query: /Volumes/Bay3/Software/bismark_v0.6.4/filtered_Unlabeled_NoIndex_L003_R1_trimmed.fastq  Reference: cgigas_prealpha_v020.fa  Output: /Volumes/Bay3 scratch//tmp/BSMAP_output_trimmed_PREv0_2_0.sam